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Publications

2018 - 2023

  • von Dahlen J.K., Schulz K., Nicolai J. and Rose L.E. (2023) Global expression patterns of R-genes in tomato and potato. Front. Plant Sci. 14:1216795. doi: 10.3389/fpls.2023.1216795
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  • Dumack, K., Feng, K., Flues, S., Sapp, M., Schreiter, S., Grosch, R., Rose, L.E., Deng, Y., Smalla, K., Bonkowski, M. (2022) What Drives the Assembly of Plant-associated Protist Microbiomes? Investigating the Effects of Crop Species, Soil Type and Bacterial Microbiomes. Protist 173 (2022) 125913
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  • Dumack, K., Sapp, M., von Steimker, T., Mänz, A.T., Rose, L.E., Bonkowski, M. (2021) A Call for Research: A Resource of Core Microbial Symbionts of the Arabidopsis thaliana Microbiome Ready and Awaiting Experimental Exploration. Phytobiomes Journal doi.org/10.1094/PBIOMES-11-20-0080-A
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  • López-Sánchez, A., Bareth, G., Bolten, A., Rose, L.E., Mansfeldt, T., Sapp, M., Linstädter, A. (2021) Effects of declining oak vitality on ecosystem multifunctionality: Lessons from a Spanish oak woodland. Forest Ecol. Manag.  484
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  • Schnake, A., Hartmann, M., Schreiber, S., Malik, J., Brahmann, L., Yildiz, I., von Dahlen, J.K., Rose, L.E., Schaffrath, U., Zeier J. (2020) Inducible biosynthesis and immune function of the systemic acquired resistance inducer N-hydroxypipecolic acid in monocotyledonous and dicotyledonous plants. J. Exp. Bot. doi.org/10.1093/jxb/eraa317
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  • de Vries, S., Stukenbrock, E.H., Rose, L.E. (2020) Rapid evolution in plant–microbe interactions – an evolutionary genomics perspective.
    New Phytologist  doi.org/10.1111/nph.16458
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  • Sapp, M., Tyborski, N., Linstädter, A., López Sánchez, A., Mansfeldt, T., Waldhoff, G., Bareth, G., Bonkowski, M., Rose, L.E. (2019) Site‐specific distribution of oak rhizosphere‐associated oomycetes revealed by cytochrome c oxidase subunit II metabarcoding. Ecol. Evol. 9: 10567-10581 
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  • de Vries, S., de Vries J., Rose, L.E. (2019) The Elaboration of miRNA Regulation and Gene Regulatory Networks in Plant-Microbe Interactions. Genes 10: 310
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  • Richards, S., Rose, L.E. (2019) The evolutionary history of LysM-RLKs (LYKs/LYRs) in wild tomatoes. BMC Evolutionary Biology 19: 141
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  • Bahramisharif, A., Rose, L.E. (2019) Efficacy of biological agents and compost on growth and resistance of tomatoes to late blight. Planta 249: 799-813.
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  • Rose, L.E., Overdijk, E.J.R., van Damme, M. (2019) Small RNA molecules and their role in plant disease. Eur. J. Plant Pathol. 153: 1-14.
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  • Beddows, I., Rose, L.E. (2018) Factors determining hybridization rate in plants: A case study in Michigan. Perspect. Plant Ecol. 34: 51-60.
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  • Frantzeskakis, L., von Dahlen, J.K., Panstruga, R., Rose, L.E. (2018) Rapid evolution in the tug-of-war between microbes and plants. New Phytologist 219: 12–14.
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  • de Vries, S., de Vries, J., von Dahlen, J.K., Gould, S.B., Archibald, J.M., Rose, L.E., Slamovits, C.H. (2018) On plant defense signaling networks and early land plant evolution. Communicative & Integrative Biology. 11:3, 1-14.
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  • de Vries, S., von Dahlen, J.K., Schnake, Anika, Ginschel, S., Schulz, B., Rose, L.E. (2018) Broad-spectrum inhibition of Phytophthora infestans by fungal endophytes. FEMS Microbiology Ecology: 94.
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  • de Vries, S., Kukuk, A., von Dahlen, J.K., Schnake, A., Kloesges, T., Rose, L.E. (2018) Expression profiling across wild and cultivated tomatoes supports the relevance of early miR482/2118 suppression for Phytophthora resistance. Proc. R. Soc. B 285: 20172560.
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  • de Vries, S., de Vries, J., Teschke, H., von Dahlen, J.K., Rose, L.E., Gould, S.B. (2018) Jasmonic and salicylic acid response in the fern Azolla filiculoides and its cyanobiont. Plant Cell Environment. 41: 2530-2548.
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  • Sapp, M., Ploch, S., Fiore-Donno, A.M., Bonkowski, M., Rose, L.E. (2018) Protists are an integral part of the Arabidopsis thaliana microbiome. Environmental Microbiology. 20: 30-43.
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2013 - 2017

  • Beddows, I., Reddy, A., Kloesges, T., Rose, L.E. (2017) Population genomics in wild tomatoes - the interplay of divergence and admixture. Genome Biology and Evolution 9: 3023–3038.
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  • de Vries, J., de Vries, S., Slamovits, C.H., Rose, L.E., Archibald, J.M. (2017) How Embryophytic is the Biosynthesis of Phenylpropanoids and their Derivatives in Streptophyte Algae? Plant and Cell Physiology 58: 934-945.
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  • de Vries, S., von Dahlen, J.K., Uhlmann, C., Schnake, A., Kloesges, T., Rose, L.E. (2017) Signatures of selection and host adapted gene expression of the Phytophthora infestans RNA-silencing suppressor PSR2. Molecular Plant Pathology 18: 110-124.
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  • Ploch, S., Rose, L.E., Bass, D., Bonkowski, M. (2016) High diversity revealed in leaf associated Protists (Rhizaria: Cercozoa) of Brassicaceae. Journal of Eukaryotic Microbiology 63: 635–641.
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  • Heidel, A., Kiefer, C., Coupland, G., Rose, L.E. (2016) Pinpointing genes underlying annual/perennial transitions with comparative genomics. BMC Genomics 17: 921.
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  • de Vries, S., Kloesges, T., Rose, L.E. (2015) Evolutionarily Dynamic, but Robust, Targeting of Resistance Genes by the miR482/2118 Gene Family in the Solanaceae. Genome Biology and Evolution  7: 3307-3321.
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  • Rauch, C., de Vries, J., Rommel, S., Rose, L.E., Woehle, C., Christa, G., Laetz, E.M., Waegele, H., Tielens, A.G.M., Nickelsen, J., Schumann, T., Jahns, P., Gould, S.B. (2015) Why it is time to look beyond algal genes in photosynthetic slugs. Genome Biology and Evolution 7: 2602-2607.
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  • Grzeskowiak, L., Stephan, W., Rose, L.E. (2014) Epistatic selection and coadaptation in the Prf resistance complex of wild tomato. Infection, Genetics and Evolution 27: 456-471.
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  • Mathew, L.A., Staab, P.A., Rose, L.E.,  Metzler, D. (2013) Why to account for finite-sites in population genetic studies and how to do this with Jaatha 2.0. Ecology and Evolution 3: 2647-3662.
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2008 - 2012

  • Rose, L.E., Atwell, S., Grant, M., Holub, E.B.  (2012) Parallel loss-of-function at the RPM1 bacterial resistance locus in Arabidopsis thaliana. Frontiers in Plant Science. DOI: 10.3389/fpls.2012.00287
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  • Hörger, A.C., Ilyas, M., Stephan, W., Tellier, A., van der Hoorn, R.A.L., Rose, L.E. (2012) Balancing selection at the tomato RCR3 Guardee gene family maintains variation in strength of pathogen defense. PLoS Genetics 8: e1002813.
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  • Gossmann, J.A., Markmann, K., Brachmann, A., Rose, L.E., Parniske, M. (2012) Polymorphic infection and organogenesis patterns induced by a Rhizobium leguminosarum isolate from Lotus root nodules are determined by the host genotype. New Phytologist 196: 561-573.
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  • Rose, L.E., Grzeskowiak, L., Hörger, A., Groth, M., Stephan, W. (2011) Targets of selection in a disease resistance network in wild tomatoes. Molecular Plant Pathology 12: 921-927.
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  • Naduvilezhath, L., Rose, L.E., Metzler, D. (2011) Jaatha: A fast composite likelihood approach to estimate demographic parameters. Molecular Ecology 20: 2709–2723.
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  • Tellier, A., Pfaffelhuber, P., Haubold, B., Naduvilezhath, L., Rose, L.E., Staedler, T., Stephan, W., Metzler, D. (2011) Estimating parameters of speciation models based on refined summaries of the joint site-frequency spectrum. PLoS One 6: e18155.
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  • Hall, S., Allen, R.L., Baumber, R., Baxter, L., Bittner-Eddy, P.D., Fisher, K., Rose, L.E., Holub, E.B., Beynon, J.L. (2009) Maintenance of genetic variation in plants and pathogens involves complex network of gene-for-gene interactions. Molecular Plant Pathology 10: 449-457.
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  • Allen, R.L., Meitz, J.C., Baumber, R.E., Hall, S.A., Rose, L.E., Beynon, J.L. (2008) Natural variation reveals key amino acids for recognition specificity between downy mildew effector and an Arabidopsis resistance gene. Molecular Plant Pathology 9: 511-523.
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2003 - 2007

  • Rose, L.E., Michelmore, R.W., Langley, C.H. (2007) Natural variation in the Pto pathogen resistance gene within species of wild tomato (Lycopersicon): II. Population Genetics of Pto. Genetics 175: 1307-1319.
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  • Rose, L.E., Langley, C.H., Bernal, A.J., Michelmore, R.W. (2005) Natural variation in the Pto pathogen resistance gene within species of wild tomato (Lycopersicon): I. Functional Analysis of Pto alleles. Genetics 171: 345-357.
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  • Bernal, A., Pollack, J., Pan, Q., Rose, L.E., Kozik, A., Willits, N., Guittet, M., Kochetkova, E., Michelmore, R. (2005) Functional analysis of the plant resistance gene Pto using DNA shuffling. Journal of Biological Chemistry 280: 23073-23083.
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  • Rehmany, A.P., Gordon, A., Rose, L.E., Allen, R.L., Armstrong, M.R., Whisson, S.C., Kamoun, S., Tyler, B.M., Birch, P.R.J., Beynon, J.L. (2005) Differential recognition of highly divergent downy mildew avirulence gene alleles by RPP1 genes from two Arabidopsis lines. Plant Cell 17: 1839-1850.
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  • Allen, R.L., Bittner-Eddy, P.D., Grenville-Briggs, L.J., Meitz, J.C., Rehmany, A.P., Rose L.E., Beynon, J.L. (2004) Host-parasite co-evolutionary conflict between Arabidopsis and downy mildew. Science 306: 1957-1960.
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  • Rose, L.E., Bittner-Eddy, P.D., Langley, C.H., Holub, E.B., Michelmore, R.W., Beynon, J.L. (2004) The maintenance of extreme amino acid diversity at the disease resistance gene, RPP13, in Arabidopsis thaliana. Genetics 166: 1517-1527.
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1998 - 2002

  • Roy, B.A., Kirchner, J.W., Christian, C.E., Rose, L.E. (2001) High disease incidence and apparent disease tolerance in a North American Great Basin plant community. Evolutionary Ecology 14: 421-438.
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  • Oudemans, P., Alexander, H.M., Antonovics, J., Altizer, S., Thrall, P.H., Rose, L.E. (1998) The distribution of mating type bias in natural populations of the anther smut Ustilago violacea on Silene alba in Virginia. Mycologia 90: 372-381.
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